Basic Information
Locus ID:
populus_peu13412
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2246762 | 2252467 | + | populus_peu13412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 80,747.42 Da | 50.47 | 56.00 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 263 | 291 | 3.1E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 297 | 324 | 1.3E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 256 | 292 | 3.14E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 257 | 293 | 1.2E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 294 | 326 | 4.6E-8 | - |
| SMART | SM00547 | zf_4 | 265 | 289 | 2.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 298 | 322 | 0.06 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 263 | 292 | 10.071154 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 296 | 325 | 9.325869 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 300 | 319 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 267 | 286 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 426 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_011036790.1 | PREDICTED: uncharacterized protein LOC105134175 isoform X1 [Populus euphratica] | 0 |
| TrEMBL | A0A2K2AAY6 | Zinc finger protein VAR3, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_005G033000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology