Basic Information
Locus ID:
populus_peu13375
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1917312 | 1920997 | - | populus_peu13375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 42,579.34 Da | 34.52 | 87.72 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 276 | 0.0038 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 357 | 9.01E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 32 | 363 | 1.2E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 277 | 0.0082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 233 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 23 | 58 | 110.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011036852.1 | PREDICTED: autophagy-related protein 18a-like [Populus euphratica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YQL2 | Autophagy-related protein 18a OS=Populus deltoides OX=3696 GN=H0E87_009707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology