Basic Information
Locus ID:
populus_peu13327
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1654914 | 1664272 | - | populus_peu13327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 107,508.81 Da | 38.45 | 83.00 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 772 | 805 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 343 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 218 | 810 | 1.96E-43 | IPR011047 |
| SUPERFAMILY | SSF50993 | Peptidase/esterase 'gauge' domain | 740 | 981 | 8.63E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 611 | 826 | 1.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 400 | 553 | 3.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 398 | 7.1E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 827 | 967 | 1.7E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 855 | 897 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 432 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 723 | 763 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 475 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 386 | 0.22 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 296 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 766 | 805 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 343 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 773 | 808 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 773 | 814 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 484 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 344 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 330 | 344 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 985 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_011036914.1 | PREDICTED: topless-related protein 3 [Populus euphratica] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YQH0 | CTLH domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_009668 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology