Basic Information
Locus ID:
populus_peu13308
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DUF761-associated sequence motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1519451 | 1533472 | - | populus_peu13308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 169,156.92 Da | 47.05 | 72.28 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 169 | 362 | 1.75917E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 363 | 496 | 3.13608E-65 | - |
| Pfam | PF14309 | Domain of unknown function (DUF4378) | 1354 | 1506 | 2.0E-33 | IPR025486 |
| Pfam | PF16124 | RecQ zinc-binding | 499 | 568 | 9.5E-13 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 379 | 486 | 7.2E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 173 | 341 | 1.1E-15 | IPR011545 |
| Pfam | PF14383 | DUF761-associated sequence motif | 689 | 719 | 2.4E-13 | IPR032795 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 210 | 507 | 4.08E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 363 | 571 | 4.8E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 128 | 362 | 2.1E-80 | IPR027417 |
| SMART | SM00490 | helicmild6 | 405 | 487 | 1.2E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 167 | 371 | 1.5E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 169 | 579 | 6.5E-151 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 377 | 527 | 19.277653 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 179 | 355 | 19.92132 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 294 | 303 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 941 | - | - |
| Coils | Coil | Coil | 660 | 680 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_011036937.1 | PREDICTED: uncharacterized protein LOC105134285 isoform X1 [Populus euphratica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YQ66 | DNA helicase OS=Populus deltoides OX=3696 GN=H0E87_009651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology