Basic Information
Locus ID:
populus_peu13287
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1343017 | 1345786 | + | populus_peu13287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 58,312.30 Da | 49.10 | 53.79 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 490 | 521 | 1.1E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 389 | 474 | 2.6E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 389 | 474 | 8.4E-32 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 74 | - | - |
| Coils | Coil | Coil | 381 | 415 | - | - |
| Coils | Coil | Coil | 427 | 447 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_011038930.1 | PREDICTED: uncharacterized protein LOC105135646 [Populus euphratica] | 0 |
| TrEMBL | A0A3N7EZN2 | PAPA-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G014000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology