Basic Information
Locus ID:
populus_peu13178
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 363060 | 365584 | + | populus_peu13178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 49,915.20 Da | 55.34 | 80.53 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 155 | 400 | 6.8E-78 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 74 | 434 | 1.37E-118 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 72 | 428 | 5.6E-109 | IPR012334 |
| SMART | SM00710 | pbh1 | 322 | 343 | 3500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 240 | 261 | 53.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 190 | 239 | 1800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 283 | 5900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 293 | 314 | 1.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 270 | 283 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011039005.1 | PREDICTED: polygalacturonase At1g48100-like [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2A9T7 | Polygalacturonase OS=Populus trichocarpa OX=3694 GN=POPTR_005G005500 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology