Basic Information
Locus ID:
populus_peu13115
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA topoisomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 37739559 | 37750927 | - | populus_peu13115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 98,090.68 Da | 34.92 | 76.02 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 597 | 671 | 4.12126E-48 | - |
| CDD | cd12354 | RRM3_TIA1_like | 716 | 790 | 6.26101E-35 | - |
| Pfam | PF01396 | Topoisomerase DNA binding C4 zinc finger | 245 | 281 | 1.1E-8 | IPR013498 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 513 | 578 | 2.0E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 598 | 668 | 1.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 718 | 783 | 1.7E-11 | IPR000504 |
| Pfam | PF13368 | Topoisomerase C-terminal repeat | 307 | 368 | 5.5E-8 | IPR025589 |
| Pfam | PF01131 | DNA topoisomerase | 7 | 202 | 1.2E-46 | IPR013497 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 495 | 589 | 2.15E-20 | IPR035979 |
| SUPERFAMILY | SSF56712 | Prokaryotic type I DNA topoisomerase | 6 | 254 | 2.09E-53 | IPR023405 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 591 | 686 | 1.75E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 703 | 794 | 2.31E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 459 | 592 | 1.0E-17 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 593 | 689 | 5.3E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 694 | 794 | 6.6E-23 | IPR012677 |
| Gene3D | G3DSA:1.10.460.10 | Topoisomerase I, domain 2 | 66 | 220 | 5.7E-39 | IPR013824 |
| Gene3D | G3DSA:3.30.65.10 | Bacterial Topoisomerase I, domain 1 | 239 | 288 | 8.1E-6 | - |
| SMART | SM00360 | rrm1_1 | 512 | 581 | 3.3E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 597 | 670 | 8.6E-23 | IPR000504 |
| SMART | SM00437 | topIaneu2 | 1 | 165 | 1.6E-8 | IPR003602 |
| SMART | SM00360 | rrm1_1 | 717 | 786 | 6.1E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 596 | 674 | 16.892406 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 511 | 585 | 14.555817 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 716 | 790 | 15.084535 | IPR000504 |
| PRINTS | PR00417 | Prokaryotic DNA topoisomerase I signature | 128 | 142 | 1.9E-9 | IPR013497 |
| PRINTS | PR00417 | Prokaryotic DNA topoisomerase I signature | 13 | 29 | 1.9E-9 | IPR013497 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31210.3 | - | 0 |
| RefSeq | XP_011006668.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X2 [Populus euphratica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2NBQ9 | DNA topoisomerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS481934 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology