Basic Information
Locus ID:
populus_peu13041
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 37115949 | 37119268 | + | populus_peu13041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 31,529.83 Da | 45.23 | 80.42 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 181 | 278 | 2.3E-13 | IPR001394 |
| Pfam | PF01753 | MYND finger | 73 | 110 | 9.6E-11 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 70 | 113 | 5.41E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 180 | 278 | 1.65E-20 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 162 | 282 | 3.4E-23 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 59 | 115 | 2.1E-15 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 73 | 110 | 12.319962 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 181 | 285 | 14.153273 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 182 | 197 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 73 | 110 | - | IPR002893 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_011031394.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 18-like [Populus euphratica] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4U5MYU7 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Populus alba OX=43335 GN=D5086_0000286500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology