Basic Information
Locus ID:
populus_peu12994
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36732069 | 36741527 | + | populus_peu12994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 108,853.68 Da | 51.52 | 58.47 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 723 | 769 | 4.44203E-4 | IPR002999 |
| Pfam | PF09465 | Lamin-B receptor of TUDOR domain | 722 | 763 | 4.9E-5 | IPR019023 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 720 | 765 | 4.74E-7 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 51 | 246 | 4.13E-7 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 719 | 771 | 1.5E-11 | - |
| SMART | SM00333 | TUDOR_7 | 718 | 778 | 0.0035 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 957 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 931 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 874 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_011031467.1 | PREDICTED: myb-like protein X isoform X3 [Populus euphratica] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2A8P0 | Tudor domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G263300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology