Basic Information
Locus ID:
populus_peu12980
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36610018 | 36612139 | + | populus_peu12980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 54,372.55 Da | 58.50 | 73.05 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 156 | 492 | 3.57158E-136 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 161 | 486 | 5.7E-75 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 393 | 457 | 1.68E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 157 | 488 | 7.1E-72 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 392 | 457 | 3.0E-102 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 169 | 486 | 3.0E-102 | - |
| SMART | SM00636 | 2g34 | 157 | 486 | 8.8E-94 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 157 | 501 | 67.783455 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 264 | 272 | - | IPR001579 |
| PRINTS | PR01217 | Proline rich extensin signature | 37 | 49 | 3.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 123 | 148 | 3.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 73 | 89 | 3.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 50 | 71 | 3.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 93 | 110 | 3.3E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 63 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_011039593.1 | PREDICTED: chitinase-like protein 4 [Populus euphratica] | 0 |
| A0A072VEP0 | Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2A8M3 | GH18 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G261800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology