Basic Information
Locus ID:
populus_peu12946
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36287089 | 36296594 | + | populus_peu12946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 93,513.42 Da | 38.20 | 81.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 606 | 0.0032 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 466 | 780 | 1.1E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 664 | 795 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 370 | 662 | 1.6E-22 | IPR015943 |
| SMART | SM00668 | ctlh | 190 | 248 | 9.4E-13 | IPR006595 |
| SMART | SM00667 | Lish | 160 | 192 | 0.0013 | IPR006594 |
| SMART | SM00320 | WD40_4 | 702 | 738 | 33.0 | IPR001680 |
| SMART | SM00668 | ctlh | 1 | 49 | 0.0041 | IPR006595 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 782 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 606 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 652 | 0.81 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 190 | 248 | 12.994158 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 615 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 160 | 192 | 9.487494 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 49 | 10.954687 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 610 | 8.702878 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 593 | 607 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 467 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011039627.1 | PREDICTED: LOW QUALITY PROTEIN: topless-related protein 1-like [Populus euphratica] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A172CN11 | WD-40 repeat family protein-1 OS=Populus tomentosa OX=118781 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology