Basic Information
Locus ID:
populus_peu12945
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36262893 | 36269964 | - | populus_peu12945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 120,346.40 Da | 36.97 | 84.44 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 871 | 904 | 0.0041 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 6 | 34 | 3.4E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 471 | 8.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 791 | 1051 | 4.76E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 647 | 1.71E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 518 | 9.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 673 | 1.2E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 917 | 1068 | 1.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 700 | 916 | 5.5E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 519 | 562 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 822 | 862 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 649 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 783 | 819 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 904 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 516 | 0.0093 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 4.8E-6 | IPR006594 |
| SMART | SM00668 | ctlh | 35 | 93 | 9.0E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 472 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1015 | 1049 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 956 | 997 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 10.644663 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 36 | 93 | 13.043163 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 872 | 913 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 439 | 481 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 872 | 906 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 583 | 614 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 439 | 476 | 8.834696 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 459 | 473 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1089 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011039629.1 | PREDICTED: topless-related protein 1-like isoform X1 [Populus euphratica] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2K2A8D2 | Topless-related protein 1-like OS=Populus trichocarpa OX=3694 GN=POPTR_006G257900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology