Basic Information
Locus ID:
populus_peu12895
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
EBF2
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35926930 | 35931395 | + | populus_peu12895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 68,963.73 Da | 39.55 | 101.55 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 218 | 241 | 6.0E-4 | IPR001611 |
| Pfam | PF00646 | F-box domain | 69 | 112 | 7.8E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 538 | 559 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 243 | 266 | 0.15 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 269 | 292 | 0.045 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 65 | 105 | 1.96E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 311 | 646 | 3.66E-30 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 179 | 419 | 4.71E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 245 | 443 | 3.8E-37 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 69 | 103 | 7.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 104 | 244 | 4.5E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 447 | 530 | 7.4E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 531 | 647 | 3.5E-17 | IPR032675 |
| SMART | SM00256 | fbox_2 | 71 | 112 | 5.2E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 456 | 481 | 0.25 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 588 | 613 | 9.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 402 | 427 | 370.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 350 | 375 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 482 | 507 | 1.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 376 | 401 | 0.0022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 218 | 243 | 1.1E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 509 | 536 | 74.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 244 | 269 | 6.9E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 562 | 586 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 192 | 217 | 0.024 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 270 | 295 | 3.5E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 539 | 561 | 8.5 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_011039690.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2A865 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G254100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology