Basic Information
Locus ID:
populus_peu12858
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35695997 | 35696901 | - | populus_peu12858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 17,635.70 Da | 27.20 | 80.44 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 5 | 23 | 0.086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 67 | 6.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 72 | 109 | 2.6E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 147 | 4.4E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 152 | 7.2E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 5.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 67 | 1.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 77 | 112 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 77 | 118 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 32 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 33 | 76 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 26 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 33 | 70 | 9.388329 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 96 | 110 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 10 | 24 | 6.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 96 | 110 | 6.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 54 | 68 | 6.3E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_011019763.1 | PREDICTED: coatomer subunit beta'-2-like [Populus euphratica] | 0 |
| O35142 | Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2K2A7Y5 | WD_REPEATS_REGION domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G250200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology