Basic Information
Locus ID:
populus_peu12809
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35335248 | 35335936 | - | populus_peu12809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 13,323.31 Da | 68.28 | 60.61 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 52 | 110 | 3.9E-27 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 4 | 47 | 7.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 51 | 1.74E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 68 | 6.0E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 76 | 114 | 1.7E-19 | - |
| SMART | SM00184 | ring_2 | 5 | 47 | 4.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 5 | 48 | 12.090947 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.4 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011019697.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Populus euphratica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A9PE71 | RING finger and CHY zinc finger domain-containing protein 1 OS=Populus trichocarpa OX=3694 GN=POPTR_006G245400 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology