Basic Information
Locus ID:
populus_peu12799
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35268433 | 35270458 | + | populus_peu12799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 62,985.87 Da | 45.29 | 92.94 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 66 | 1.6E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 150 | 532 | 3.61E-16 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 75 | 4.97E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 137 | 411 | 2.2E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 66 | 7.7E-8 | - |
| SMART | SM00256 | fbox_2 | 29 | 69 | 3.3E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 59 | 10.875178 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58900.3 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_011019688.1 | PREDICTED: putative F-box/LRR-repeat protein At5g38386 [Populus euphratica] | 0 |
| Q93ZX6 | F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana OX=3702 GN=At3g58900 PE=2 SV=1 | 0 | |
| TrEMBL | B9H9D8 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G244700 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2233, Ceq07G1992 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G2490, Cgl01G2516, Cgl01G2517, Cgl07G2181 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11911 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9044 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7920 |
| Salicaceae | Populus euphratica | 5 | populus_peu09581, populus_peu12799, populus_peu12841 ... |