Basic Information
Locus ID:
populus_peu12625
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 33661088 | 33665297 | + | populus_peu12625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 43,361.08 Da | 42.18 | 91.04 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 44 | 242 | 7.99835E-138 | - |
| CDD | cd18787 | SF2_C_DEAD | 253 | 353 | 8.89414E-44 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 271 | 344 | 4.4E-24 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 1.2E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 364 | 8.69E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 252 | 381 | 2.3E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 251 | 1.0E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 1.4E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 264 | 344 | 2.8E-27 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 29.352421 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.257154 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 202 | 383 | 22.13583 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_011019413.1 | PREDICTED: eukaryotic initiation factor 4A-9-like [Populus euphratica] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7ZMF1 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_026186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology