Basic Information
Locus ID:
populus_peu12559
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 33012198 | 33013139 | + | populus_peu12559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 36,056.81 Da | 58.39 | 80.64 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 264 | 307 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 263 | 311 | 1.1E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 312 | 4.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 264 | 306 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 264 | 307 | 11.913911 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002308513.2 | uncharacterized protein LOC7492284 [Populus trichocarpa] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | B9HCQ3 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G219000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.288 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13279, nbisL1-mrna-15712 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3687 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16705 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000013l.181, add.evm.TU.utg000033l.67 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21069, nbisL1-mrna-23502 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14186, nbisL1-mrna-14673 |
| Salicaceae | Populus euphratica | 1 | populus_peu12559 |