Basic Information
Locus ID:
populus_peu12407
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 31492369 | 31493914 | - | populus_peu12407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 46,606.04 Da | 46.44 | 95.68 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 2.36493E-19 | - |
| Pfam | PF04564 | U-box domain | 6 | 78 | 1.5E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 100 | 373 | 1.02E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 84 | 2.78E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 86 | 393 | 1.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 1.4E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 4.5E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 34.862671 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011046429.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24 [Populus euphratica] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2A573 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_006G202700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology