Basic Information
Locus ID:
populus_peu12278
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29784477 | 29788646 | - | populus_peu12278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 104,503.89 Da | 34.95 | 96.87 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 72 | 2.9E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 533 | 592 | 1.1E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 714 | 944 | 8.9E-17 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 295 | 347 | 3.5E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 382 | 6.8E-59 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 286 | 598 | 3.84E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 705 | 947 | 1.19E-31 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 768 | 955 | 5.7E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 283 | 1.3E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 189 | 3.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 388 | 628 | 2.7E-64 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 767 | 7.7E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 284 | 387 | 6.1E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 268 | 291 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 340 | 364 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 555 | 579 | 87.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 704 | 954 | 2.7E-4 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 124 | 148 | 42.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 682 | 950 | 19.877363 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 808 | 820 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 295 | 308 | 7.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 555 | 568 | 7.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51350.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_011033479.1 | PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Populus euphratica] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2A4H7 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G189000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8913 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1600, Sbi_jg34960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003349 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72772, Sgl76310 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009288, gene:ENSEOMG00000033946 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023440, CQ.Regalona.r1.8BG0018920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179450 |
| Apiaceae | Apium graveolens | 1 | Ag2G00449 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G00365, Ftri7G17717 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005775m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2507 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2644 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-272 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.175 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015559 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31990 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1111, evm.TU.LG05.1654 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.154 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16586 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.96 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014990 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14542 |
| Salicaceae | Populus euphratica | 2 | populus_peu05639, populus_peu12278 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603054 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025774 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12325_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1097 |