Basic Information
Locus ID:
populus_peu12271
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29717450 | 29719448 | + | populus_peu12271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 39,575.60 Da | 26.40 | 75.60 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 357 | 1.65749E-154 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 351 | 2.7E-83 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 257 | 322 | 3.66E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 353 | 8.99E-71 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 256 | 322 | 4.6E-116 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 353 | 4.6E-116 | - |
| SMART | SM00636 | 2g34 | 26 | 351 | 9.4E-107 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 366 | 72.011612 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_011033474.1 | PREDICTED: chitotriosidase-1-like [Populus euphratica] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | U5G834 | GH18 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G188400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology