Basic Information
Locus ID:
populus_peu12270
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29715792 | 29717249 | + | populus_peu12270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 40,269.52 Da | 28.97 | 75.41 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 25 | 361 | 1.10784E-151 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 355 | 2.0E-81 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 31 | 360 | 4.57E-68 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 261 | 326 | 5.1E-12 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 260 | 326 | 3.1E-114 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 357 | 3.1E-114 | - |
| SMART | SM00636 | 2g34 | 27 | 355 | 3.9E-101 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 27 | 370 | 73.330864 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | H6WS86 | Chitinase 2 OS=Populus canadensis OX=3690 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology