Basic Information
Locus ID:
populus_peu12249
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
CCR4-associated factor 1 homolog 7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29523266 | 29524518 | + | populus_peu12249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 30,315.21 Da | 25.52 | 95.24 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 158 | 221 | 5.7E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 135 | 3.9E-10 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 11 | 265 | 8.35E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 269 | 5.3E-100 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_011033459.1 | PREDICTED: probable CCR4-associated factor 1 homolog 6 [Populus euphratica] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | B9HAR6 | poly(A)-specific ribonuclease OS=Populus trichocarpa OX=3694 GN=POPTR_006G187200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology