Basic Information
Locus ID:
populus_peu12111
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
cla,cla1,def,dxps2,dxs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26214960 | 26216901 | + | populus_peu12111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 30,131.26 Da | 37.77 | 85.42 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 165 | 245 | 1.99953E-38 | - |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 160 | 245 | 4.6E-19 | IPR005475 |
| Pfam | PF13292 | 1-deoxy-D-xylulose-5-phosphate synthase | 37 | 124 | 2.6E-15 | IPR005477 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 143 | 245 | 5.67E-32 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 192 | 4.42E-20 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 34 | 133 | 4.1E-12 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 161 | 273 | 4.7E-28 | - |
| SMART | SM00861 | Transket_pyr_3 | 161 | 272 | 7.9E-4 | IPR005475 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00730 (Thiamine metabolism)
map00730 (Thiamine metabolism)
ko00900 (Terpenoid backbone biosynthesis)
map00900 (Terpenoid backbone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15560.1 | Deoxyxylulose-5-phosphate synthase. Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis | 0 |
| RefSeq | XP_011012653.1 | PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Populus euphratica] | 0 |
| A0A803PDZ0 | 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cannabis sativa OX=3483 GN=DXS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T2YJ07 | Transket_pyr domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30242 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl04338, Sgl09407, Sgl27108, Sgl43201, Sgl47995, Sgl53505 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G627800 |
| Salicaceae | Populus euphratica | 1 | populus_peu12111 |