Basic Information
Locus ID:
populus_peu11959
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Boron transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 17968334 | 17978349 | + | populus_peu11959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 109,818.31 Da | 44.97 | 95.27 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 61 | 112 | 1.46705E-23 | - |
| Pfam | PF00955 | HCO3- transporter family | 344 | 426 | 5.7E-15 | IPR011531 |
| Pfam | PF00955 | HCO3- transporter family | 435 | 493 | 2.2E-8 | IPR011531 |
| Pfam | PF12906 | RING-variant domain | 61 | 111 | 5.2E-10 | IPR011016 |
| Pfam | PF00955 | HCO3- transporter family | 766 | 856 | 5.9E-21 | IPR011531 |
| Pfam | PF00955 | HCO3- transporter family | 513 | 688 | 1.0E-24 | IPR011531 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 116 | 1.53E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 124 | 8.7E-17 | IPR013083 |
| Gene3D | G3DSA:1.10.287.570 | Helical hairpin bin | 357 | 399 | 3.5E-5 | - |
| SMART | SM00744 | ringv_2 | 60 | 112 | 3.6E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 53 | 118 | 21.777313 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15460.1 | HCO3- transporter family. Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions. | 0 |
| RefSeq | XP_011013545.1 | PREDICTED: boron transporter 4-like isoform X2 [Populus euphratica] | 0 |
| Q9XI23 | Boron transporter 4 OS=Arabidopsis thaliana OX=3702 GN=BOR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4VQY2 | RING-CH-type domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_009448 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology