Basic Information
Locus ID:
populus_peu11809
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13671794 | 13676729 | - | populus_peu11809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 45,198.16 Da | 44.37 | 66.38 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 130 | 204 | 6.77676E-54 | - |
| CDD | cd12352 | RRM1_TIA1_like | 46 | 116 | 3.70281E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 249 | 323 | 3.19331E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 46 | 112 | 1.3E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 251 | 317 | 4.1E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 131 | 201 | 2.0E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 33 | 122 | 1.14E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 239 | 324 | 1.03E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 210 | 1.48E-28 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 124 | 219 | 5.5E-28 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 226 | 326 | 3.4E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 37 | 123 | 8.8E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 130 | 203 | 1.6E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 250 | 319 | 4.9E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 45 | 114 | 1.2E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 207 | 18.120396 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 44 | 118 | 14.845758 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 249 | 323 | 14.931036 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 245 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011039952.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X1 [Populus euphratica] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | U5GAP4 | Oligouridylate-binding protein 1-like OS=Populus trichocarpa OX=3694 GN=POPTR_006G139300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology