Basic Information
Locus ID:
populus_peu11739
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12534314 | 12537639 | - | populus_peu11739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 66,792.70 Da | 48.44 | 85.73 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 117 | 506 | 3.39015E-112 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 163 | 507 | 1.2E-76 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 112 | 506 | 6.54E-91 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 359 | 391 | 9.9E-9 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 399 | 509 | 1.3E-29 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 338 | 358 | 9.9E-9 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 60 | 287 | 3.0E-42 | - |
| SMART | SM00119 | hect_3 | 133 | 507 | 8.5E-74 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 122 | 520 | 55.591312 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_011004156.1 | PREDICTED: E3 ubiquitin-protein ligase UPL4 isoform X1 [Populus euphratica] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | U5G6X6 | HECT-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_006G132000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology