Basic Information
Locus ID:
populus_peu11637
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11193705 | 11197757 | + | populus_peu11637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 32,324.96 Da | 60.30 | 52.14 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 204 | 261 | 2.7E-25 | IPR039512 |
| Pfam | PF14634 | zinc-RING finger domain | 156 | 201 | 2.1E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 21 | 102 | 6.8E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 18 | 92 | 1.44E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 204 | 1.68E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 93 | 150 | 8.24E-20 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 228 | 267 | 8.4E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 219 | 1.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 199 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 14 | 90 | 25.338274 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 92 | 156 | 35.181084 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 200 | 11.899158 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011018804.1 | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Populus euphratica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EPA6 | RING-type domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology