Basic Information
Locus ID:
populus_peu11450
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 9272798 | 9276301 | + | populus_peu11450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 59,621.34 Da | 30.79 | 92.92 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 542 | 2.49519E-73 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 207 | 1.82531E-72 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 209 | 2.6E-27 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 355 | 3.8E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 513 | 5.6E-13 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 405 | 539 | 1.2E-33 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 229 | 381 | 2.09E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 217 | 8.96E-37 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 392 | 6.5E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 215 | 5.7E-50 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 548 | 2.1E-45 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 549 | 6.6E-182 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_011019081.1 | PREDICTED: pyruvate decarboxylase 2-like [Populus euphratica] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | B9HCY7 | pyruvate decarboxylase OS=Populus trichocarpa OX=3694 GN=POPTR_006G102500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology