Basic Information
Locus ID:
populus_peu11277
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 7151144 | 7159418 | - | populus_peu11277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 72,416.59 Da | 50.03 | 66.94 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 528 | 568 | 3.0E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 461 | 510 | 7.6E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 251 | 306 | 3.6E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 525 | 570 | 1.48E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 595 | 650 | 1.57E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 655 | 1.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 517 | 580 | 5.9E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 597 | 654 | 2.0E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 527 | 568 | 8.4E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 525 | 570 | 10.059599 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 595 | 656 | 8.5822 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 528 | 567 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 598 | 653 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 124 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011019891.1 | PREDICTED: uncharacterized protein LOC105122478 [Populus euphratica] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1ZYX9 | Increased DNA methylation 1 OS=Populus trichocarpa OX=3694 GN=POPTR_006G083600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology