Basic Information
Locus ID:
populus_peu11115
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5786817 | 5796571 | + | populus_peu11115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 118,527.16 Da | 41.95 | 80.81 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 953 | 3.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 491 | 4.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 345 | 534 | 1.74E-26 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 479 | 958 | 1.1E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 694 | 9.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 515 | 1.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 810 | 1059 | 1.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 627 | 668 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 5.2E-5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.8E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 581 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 868 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1005 | 1046 | 75.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.80262 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 457 | 491 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.907598 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 953 | 10.15287 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_011020157.1 | PREDICTED: topless-related protein 4-like isoform X1 [Populus euphratica] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6M2EHW5 | Topless-related protein 4-like OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology