Basic Information
Locus ID:
populus_peu11089
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5452203 | 5459326 | - | populus_peu11089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 60,358.15 Da | 26.71 | 100.65 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 249 | 337 | 7.17219E-20 | - |
| CDD | cd00030 | C2 | 414 | 510 | 8.83286E-27 | - |
| Pfam | PF00168 | C2 domain | 251 | 337 | 1.4E-17 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 64 | 235 | 1.9E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 412 | 512 | 2.2E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 409 | 530 | 7.12E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 248 | 363 | 4.84E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 392 | 530 | 2.4E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 243 | 366 | 3.2E-25 | IPR035892 |
| SMART | SM00239 | C2_3c | 413 | 511 | 6.0E-26 | IPR000008 |
| SMART | SM00239 | C2_3c | 239 | 334 | 2.2E-16 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 59 | 241 | 27.267403 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 214 | 335 | 17.345852 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 394 | 512 | 20.846989 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 455 | 468 | 3.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 429 | 441 | 3.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 485 | 3.4E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011020212.1 | PREDICTED: synaptotagmin-5-like [Populus euphratica] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5PMC6 | Synaptotagmin-5-like OS=Populus alba OX=43335 GN=D5086_0000204270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology