Basic Information
Locus ID:
populus_peu10416
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 41573381 | 41574915 | + | populus_peu10416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 31,402.26 Da | 56.49 | 75.75 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 239 | 276 | 6.38477E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 236 | 281 | 4.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 284 | 2.87E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 286 | 7.0E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 239 | 276 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 239 | 277 | 10.895954 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011047008.1 | PREDICTED: uncharacterized protein LOC105141476 [Populus euphratica] | 0 |
| TrEMBL | A0A8T2Z4F2 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_009445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology