Basic Information
Locus ID:
populus_peu10117
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38859276 | 38868351 | - | populus_peu10117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 124,906.42 Da | 48.10 | 83.60 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 989 | 1096 | 2.19213E-51 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 456 | 724 | 7.03582E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 986 | 1086 | 8.1E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 621 | 801 | 5.9E-40 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 840 | 877 | 2.5E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 476 | 512 | 1.1E-6 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 441 | 501 | 7.25E-7 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 837 | 883 | 7.95E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 732 | 1142 | 9.36E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 622 | 730 | 1.28E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 739 | 1143 | 1.6E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 425 | 515 | 8.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 833 | 890 | 1.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 605 | 737 | 6.7E-29 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1003 | 1086 | 1.2E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 840 | 878 | 1.6E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 452 | 703 | 2.3E-7 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 979 | 1139 | 13.830189 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 840 | 879 | 10.674659 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 855 | 864 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 928 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 977 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_011027908.1 | PREDICTED: uncharacterized protein LOC105128089 [Populus euphratica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7ERL5 | Helicase-like transcription factor CHR28 OS=Populus trichocarpa OX=3694 GN=POPTR_004G037700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology