Basic Information
Locus ID:
populus_peu10094
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38615052 | 38625087 | - | populus_peu10094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 111,766.29 Da | 64.08 | 77.33 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 260 | 376 | 1.06563E-19 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 266 | 376 | 8.5E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 742 | 805 | 2.15E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 149 | 402 | 5.22E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 876 | 952 | 2.81E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 146 | 406 | 9.6E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 736 | 814 | 6.6E-7 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 872 | 951 | 1.2E-7 | - |
| SMART | SM00358 | DRBM_3 | 878 | 946 | 0.0012 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 742 | 806 | 5.1E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 209 | 385 | 4.6E-16 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 877 | 947 | 10.387421 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 150 | 398 | 16.62014 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 741 | 807 | 11.407024 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 536 | - | - |
| Coils | Coil | Coil | 16 | 44 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_011027882.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Populus euphratica] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | B9H271 | protein-serine/threonine phosphatase OS=Populus trichocarpa OX=3694 GN=POPTR_004G040000 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology