Basic Information
Locus ID:
populus_peu10049
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38191555 | 38200919 | - | populus_peu10049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 83,902.85 Da | 53.02 | 73.72 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 375 | 657 | 2.97727E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 453 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 411 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 540 | 577 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 373 | 657 | 3.0E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 355 | 511 | 2.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 699 | 2.3E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 457 | 497 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 536 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 2.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 577 | 7.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 619 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 420 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 453 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 413 | 9.309238 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 453 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 506 | 10.742378 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 398 | 412 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 484 | 498 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 328 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_011027806.1 | PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Populus euphratica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7ERN4 | LisH domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G045601 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology