Basic Information
Locus ID:
populus_peu09968
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 37246914 | 37254143 | - | populus_peu09968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 100,234.49 Da | 35.66 | 94.78 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01337 | MDH_glyoxysomal_mitochondrial | 633 | 927 | 7.97091E-146 | IPR010097 |
| CDD | cd02005 | TPP_PDC_IPDC | 383 | 565 | 2.38336E-84 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 25 | 185 | 4.20125E-85 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 428 | 552 | 8.5E-14 | IPR011766 |
| Pfam | PF00056 | lactate/malate dehydrogenase, NAD binding domain | 633 | 743 | 8.0E-35 | IPR001236 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 218 | 335 | 4.8E-21 | IPR012000 |
| Pfam | PF02866 | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 756 | 926 | 6.5E-31 | IPR022383 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 21 | 187 | 9.8E-33 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 21 | 196 | 1.62E-42 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 383 | 579 | 9.11E-41 | IPR029061 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 633 | 743 | 8.58E-28 | IPR036291 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 207 | 359 | 8.73E-34 | IPR029035 |
| SUPERFAMILY | SSF56327 | LDH C-terminal domain-like | 755 | 928 | 3.71E-28 | IPR015955 |
| Gene3D | G3DSA:3.40.50.1220 | - | 208 | 370 | 2.6E-40 | - |
| Gene3D | G3DSA:3.90.110.10 | - | 756 | 929 | 1.3E-49 | IPR015955 |
| Gene3D | G3DSA:3.40.50.970 | - | 19 | 193 | 1.9E-57 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 377 | 564 | 1.6E-55 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 624 | 749 | 1.5E-41 | - |
| TIGRFAM | TIGR01772 | MDH_euk_gproteo: malate dehydrogenase, NAD-dependent | 633 | 928 | 1.5E-82 | IPR010097 |
| ProSitePatterns | PS00068 | Malate dehydrogenase active site signature. | 755 | 767 | - | IPR001252 |
| Coils | Coil | Coil | 924 | 930 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
GO:0000287 (magnesium ion binding)
GO:0003824 (catalytic activity)
GO:0016491 (oxidoreductase activity)
GO:0016615 (malate dehydrogenase activity)
GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
GO:0030060 (L-malate dehydrogenase (NAD+) activity)
GO:0030976 (thiamine pyrophosphate binding)
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_002305755.3 | pyruvate decarboxylase 1 [Populus trichocarpa] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5N249 | pyruvate decarboxylase OS=Salix brachista OX=2182728 GN=DKX38_005640 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology