Basic Information
Locus ID:
populus_peu09853
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 35652583 | 35662425 | + | populus_peu09853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 182,146.61 Da | 44.57 | 91.94 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 443 | 490 | 2.5E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 648 | 695 | 6.2E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 197 | 246 | 3.1E-13 | IPR002885 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1319 | 1589 | 4.1E-30 | IPR001245 |
| Pfam | PF12854 | PPR repeat | 509 | 541 | 8.6E-6 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 405 | 436 | 2.2E-8 | IPR002885 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 286 | 402 | 1.5E-7 | IPR033443 |
| Pfam | PF13041 | PPR repeat family | 729 | 776 | 1.3E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 617 | 645 | 0.42 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 166 | 195 | 0.17 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 548 | 575 | 0.0012 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1318 | 1593 | 1.08E-50 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 1029 | 1203 | 5.67E-22 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 165 | 262 | 4.6E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 263 | 335 | 1.7E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 468 | 621 | 8.2E-35 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1391 | 1601 | 6.1E-38 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 367 | 467 | 1.8E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 622 | 807 | 1.3E-41 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1283 | 1390 | 1.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1024 | 1204 | 1.2E-33 | IPR032675 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 341 | 373 | 2.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 732 | 765 | 3.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 548 | 579 | 6.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 447 | 479 | 1.4E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 235 | 269 | 1.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 480 | 514 | 8.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 651 | 684 | 1.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 200 | 233 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 410 | 438 | 1.2E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 443 | 477 | 13.559186 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | 9.273317 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | 10.950397 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | 11.849223 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 730 | 764 | 12.67132 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1315 | 1593 | 29.587421 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 544 | 578 | 9.448698 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | 9.097937 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 614 | 648 | 9.328124 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 233 | 267 | 12.145178 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 198 | 232 | 10.13926 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | 12.616514 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 649 | 683 | 13.635915 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1264 | 1293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20190.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011035434.1 | PREDICTED: probable inactive receptor kinase At2g26730 isoform X1 [Populus euphratica] | 0 |
| Q9LJY0 | Pollen receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=PRK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Z2N7 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_008980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28469, jg28470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102030 |
| Apiaceae | Apium graveolens | 3 | Ag3G00986, Ag6G00829, Ag9G00333 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712491, gene-LOC103720324 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3496.V1.1, AsparagusV1_08.2208.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G09226, Ftri12G31623, Ftri12G33467, Ftri7G19365 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0661 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11640, gene.Thate06g07950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002091, Pov_00019849, Pov_00019850, Pov_00039828 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2167, Contig328.4 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112150, gene-QOZ80_2BG0165550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0046210.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011668, gene-QYE76_011793, gene-QYE76_043862 |
| Poaceae | Oryza coarctata | 2 | Oco19G006840, Oco20G006820 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66040.1, LOC_Os10g35040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G190900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502701, Pt_Chr0502716 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030410, Chr09G001740, Chr15G021780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G302300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025340, gene_TRIDC1BG030460 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G165600.1, TraesCS1B02G182300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044900_P006 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43938 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15229 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1569 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3650 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4601 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18957 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.371 |
| Salicaceae | Populus euphratica | 7 | populus_peu02536, populus_peu02538, populus_peu09853 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600179, gene-LOC132632451 |
| Solanaceae | Solanum chilense | 2 | SOLCI001227200, SOLCI005915700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013989, gene-LOC107029243 |