Basic Information
Locus ID:
populus_peu09531
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 31942608 | 31953764 | - | populus_peu09531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 35,636.73 Da | 49.97 | 83.73 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.355E-32 | - |
| Pfam | PF09280 | XPC-binding domain | 261 | 316 | 3.4E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.5E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 1.6E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 206 | 4.79E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 1.5E-23 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 257 | 322 | 5.36E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 3.2E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 251 | 317 | 2.0E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.1E-29 | - |
| SMART | SM00165 | uba_6 | 156 | 196 | 1.4E-5 | IPR015940 |
| SMART | SM00727 | CBM | 259 | 302 | 9.7E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 326 | 1.1E-88 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 11.727592 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 20.065241 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 118 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_011035052.1 | PREDICTED: ubiquitin receptor RAD23d-like isoform X4 [Populus euphratica] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U5QBN9 | Ubiquitin receptor RAD23 OS=Populus alba OX=43335 GN=D5086_0000112670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology