Basic Information
Locus ID:
populus_peu09437
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 29438393 | 29439076 | + | populus_peu09437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 25,486.28 Da | 52.27 | 87.97 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 206 | 2.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 211 | 1.01E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 212 | 4.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 205 | 5.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 206 | 12.356501 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011010823.1 | PREDICTED: E3 ubiquitin-protein ligase RNF126-A-like [Populus euphratica] | 0 |
| Q5M974 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | B9N7P1 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G111800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1490 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11977 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1166 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11006 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.360 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15443 |
| Salicaceae | Populus euphratica | 4 | populus_peu09437, populus_peu24083, populus_peu24085 ... |