Basic Information
Locus ID:
populus_peu09316
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 25422252 | 25423292 | + | populus_peu09316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 32,900.42 Da | 71.19 | 64.37 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 110 | 153 | 1.73053E-18 | - |
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 7.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 159 | 5.89E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 159 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 152 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 153 | 13.005633 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 240 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_011007825.1 | PREDICTED: RING-H2 finger protein ATL2-like [Populus euphratica] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | U5GM79 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G219200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology