Basic Information
Locus ID:
populus_peu09128
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 16023720 | 16025411 | + | populus_peu09128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 33,353.32 Da | 53.69 | 96.79 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 71 | 122 | 9.1E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 130 | 1.55E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 161 | 4.3E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 126 | 10.128798 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 90 | 99 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011004657.1 | PREDICTED: uncharacterized protein LOC105111100 [Populus euphratica] | 0 |
| TrEMBL | A0A8X8AE10 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_015712 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology