Basic Information
Locus ID:
populus_peu08828
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6112394 | 6115947 | - | populus_peu08828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 28,354.10 Da | 45.28 | 76.71 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 53 | 167 | 1.0E-23 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 172 | 220 | 2.9E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 161 | 224 | 8.86E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 234 | 9.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 38 | 166 | 3.5E-32 | IPR043151 |
| SMART | SM00249 | PHD_3 | 172 | 219 | 4.4E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 52 | 168 | 5.6E-45 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 170 | 221 | 9.045 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 52 | 168 | 24.094906 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 173 | 218 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_034902380.1 | chromatin remodeling protein SHL-like isoform X1 [Populus alba] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZZK0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_017726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology