Basic Information
Locus ID:
populus_peu08735
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5241012 | 5243818 | + | populus_peu08735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 82,365.21 Da | 46.52 | 83.50 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 178 | 225 | 3.8E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 55 | 106 | 4.2E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 304 | 358 | 1.8E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 175 | 229 | 6.43E-6 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 7 | 44 | 8.07E-5 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 287 | 365 | 7.43E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 110 | 168 | 1.2E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 342 | 426 | 1.67E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 52 | 112 | 3.89E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 216 | 267 | 6.73E-5 | - |
| SMART | SM00109 | c1_12 | 305 | 363 | 2.1 | IPR002219 |
| SMART | SM00109 | c1_12 | 57 | 113 | 0.0026 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 58 | 113 | 9.0963 | IPR002219 |
| Coils | Coil | Coil | 639 | 680 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61840.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_011001999.1 | PREDICTED: uncharacterized protein LOC105109099 [Populus euphratica] | 0 |
| TrEMBL | A0A8T2YZG1 | Phorbol-ester/DAG-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_008206 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |