Basic Information
Locus ID:
populus_peu08700
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4890807 | 4895039 | + | populus_peu08700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 45,453.02 Da | 32.07 | 82.21 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 292 | 329 | 7.5E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 17 | 90 | 6.8E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 206 | 242 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 285 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 385 | 7.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 150 | 389 | 2.2E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 402 | 6.1E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 245 | 285 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 386 | 0.007 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 193 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 329 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 242 | 0.0043 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 287 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 353 | 387 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 251 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 331 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 202 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 331 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 316 | 330 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 180 | 194 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 316 | 330 | 1.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_011046680.1 | PREDICTED: WD-40 repeat-containing protein MSI2-like [Populus euphratica] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8ABG2 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_017829 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology