Basic Information
Locus ID:
populus_peu08658
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4553074 | 4556230 | + | populus_peu08658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 41,910.44 Da | 51.14 | 93.03 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 31 | 292 | 1.01509E-60 | IPR000092 |
| Pfam | PF00646 | F-box domain | 317 | 355 | 5.1E-4 | IPR001810 |
| Pfam | PF00348 | Polyprenyl synthetase | 33 | 252 | 3.8E-32 | IPR000092 |
| SUPERFAMILY | SSF81383 | F-box domain | 307 | 354 | 1.06E-7 | IPR036047 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 27 | 273 | 3.29E-57 | IPR008949 |
| Gene3D | G3DSA:1.20.1280.50 | - | 305 | 359 | 1.1E-5 | - |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 18 | 303 | 5.7E-80 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 84 | 100 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 319 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 35 | 274 | 2.242E-44 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38460.1 | geranylgeranyl reductase. | 0 |
| RefSeq | XP_011046617.1 | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Populus euphratica] | 0 |
| Q39108 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N5N2D8 | F-box domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_006456 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology