Basic Information
Locus ID:
populus_peu08630
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4311092 | 4312893 | + | populus_peu08630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 35,960.93 Da | 45.59 | 61.31 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 67 | 301 | 1.57498E-94 | - |
| CDD | cd00035 | ChtBD1 | 25 | 63 | 1.10274E-14 | - |
| Pfam | PF00187 | Chitin recognition protein | 25 | 62 | 2.9E-10 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 66 | 301 | 2.4E-95 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 25 | 66 | 1.7E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 65 | 307 | 1.15E-85 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 71 | 307 | 1.3E-99 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 150 | 209 | 1.3E-99 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 23 | 65 | 1.7E-12 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 25 | 62 | 4.8E-13 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 308 | 2.9E-109 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 23 | 64 | 10.010691 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 213 | 223 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 83 | 106 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 35 | 54 | - | IPR018371 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_034929398.1 | endochitinase WIN8-like [Populus alba] | 0 |
| P16061 | Endochitinase WIN8 OS=Populus trichocarpa OX=3694 GN=WIN8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8A543 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_017883 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology