Basic Information
Locus ID:
populus_peu08426
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2722346 | 2728800 | + | populus_peu08426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 160,284.41 Da | 43.67 | 89.66 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06429 | GT8_like_1 | 371 | 668 | 3.83068E-120 | - |
| Pfam | PF01535 | PPR repeat | 991 | 1020 | 1.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 889 | 915 | 0.0035 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 760 | 785 | 0.068 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1089 | 1136 | 2.9E-10 | IPR002885 |
| Pfam | PF01501 | Glycosyl transferase family 8 | 341 | 655 | 2.4E-90 | IPR002495 |
| Pfam | PF01535 | PPR repeat | 963 | 988 | 0.042 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1265 | 1291 | 0.023 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1190 | 1237 | 6.7E-12 | IPR002885 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 372 | 670 | 3.09E-64 | IPR029044 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1149 | 1375 | 2.3E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 851 | 944 | 3.8E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1042 | 1147 | 2.0E-22 | IPR011990 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 374 | 676 | 2.5E-41 | IPR029044 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 945 | 1041 | 5.8E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 690 | 846 | 9.7E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 991 | 1025 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1092 | 1125 | 1.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1193 | 1226 | 1.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 889 | 923 | 7.6E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 989 | 1023 | 9.569272 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1090 | 1124 | 12.495939 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1191 | 1225 | 13.142656 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 787 | 821 | 8.801982 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 887 | 922 | 9.13082 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 134 | - | - |
| Coils | Coil | Coil | 302 | 322 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38270.1 | galacturonosyltransferase 3. Encodes a protein with putative galacturonosyltransferase activity. | 0 |
| RefSeq | XP_011040797.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Populus euphratica] | 0 |
| Q0WQD2 | Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GAUT3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2N9FEG1 | NPC1_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13377 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology