Basic Information
Locus ID:
populus_peu08313
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1724968 | 1733075 | + | populus_peu08313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 100,333.64 Da | 36.75 | 78.33 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 538 | 578 | 5.03884E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 472 | 522 | 2.5E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 286 | 341 | 5.7E-14 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 539 | 580 | 3.0E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 738 | 882 | 3.47E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 528 | 584 | 6.17E-17 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 619 | 679 | 5.98E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 625 | 684 | 1.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 525 | 608 | 8.4E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 626 | 682 | 0.003 | IPR001965 |
| SMART | SM00249 | PHD_3 | 538 | 579 | 5.8E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 536 | 581 | 10.4512 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 732 | 898 | 10.562305 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 539 | 578 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 435 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011028274.1 | PREDICTED: uncharacterized protein LOC105128359 isoform X1 [Populus euphratica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | U5GH02 | PHD-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G217600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology