Basic Information
Locus ID:
populus_peu08312
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1702700 | 1707876 | - | populus_peu08312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 95,280.86 Da | 63.70 | 70.11 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 792 | 831 | 2.09489E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 790 | 836 | 2.6E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 782 | 837 | 4.32E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 774 | 842 | 1.5E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 792 | 831 | 10.6304 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 451 | - | - |
| Coils | Coil | Coil | 720 | 747 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_011028278.1 | PREDICTED: uncharacterized protein LOC105128360 [Populus euphratica] | 0 |
| TrEMBL | A0A2K2AYB6 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G217700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology